PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01572g01002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 333aa    MW: 36389.8 Da    PI: 8.2119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01572g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17240273134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Niben101Scf01572g01002.1 240 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 273
                               99*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.7E-722329IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.517234270IPR000679Zinc finger, GATA-type
SMARTSM004016.4E-18234284IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.0E-15238271IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.09E-15238297No hitNo description
CDDcd002021.56E-13239286No hitNo description
PfamPF003202.3E-15240273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGSNMVDEID CGSFFDQIDD LIEFPSENEC GGLSSTDFKE FPSIWDQPSD PLFSGSYNNS  60
SSDLSAELSV PYEDIVQLEW LSTFVEDSFS GGGFTLGKEN APINKETTSH NKFQSSSPVS  120
VLASSSSSSS SSCSGGKTIP LSPCHRGPQR ARSKRPRPAT FNPRPAIQLI SPTSVLIENP  180
RPFVTSVTSS ESGNFPQSPM KKIPRPAAAE QKTKKKIKFT IPLAQIETNQ NSTAHAVRRC  240
MHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSM HSNSHKKVLE  300
MRTKDIPENN ATAKTRIPAT ITEQEFSKSS VAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760862.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_009760863.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016497965.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_016497966.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLQ76DY31e-168Q76DY3_TOBAC; AG-motif binding protein-1
STRINGSolyc05g056120.2.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-38GATA transcription factor 11